PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00639.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LSD
Protein Properties Length: 285aa    MW: 30714.9 Da    PI: 9.1193
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00639.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD137.44.2e-12730124
                  zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                             C+gCrt+L YPrGA++V+Ca+C++
  Sme2.5_00639.1_g00002.1  7 CSGCRTMLLYPRGASNVCCAVCNA 30
                             **********************97 PP

2zf-LSD1468.6e-154670125
                  zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                             CggCrtlL+ PrGA+sVRC++C+tV
  Sme2.5_00639.1_g00002.1 46 CGGCRTLLMHPRGATSVRCSCCHTV 70
                             ************************9 PP

3zf-LSD138.22.4e-1284107124
                  zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                              Cg+Cr +L+YP GApsV+Ca+C+ 
  Sme2.5_00639.1_g00002.1  84 CGNCRMMLMYPCGAPSVKCAVCHY 107
                              **********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010538.5E-13432IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-10730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.5E-174373IPR005735Zinc finger, LSD1-type
PfamPF069437.7E-134670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.1E-1181110IPR005735Zinc finger, LSD1-type
PfamPF069436.0E-1284108IPR005735Zinc finger, LSD1-type
PfamPF045353.7E-6230285IPR006702Domain of unknown function DUF588
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MQSQLMCSGC RTMLLYPRGA SNVCCAVCNA LTPVPPPGME MAQLICGGCR TLLMHPRGAT  60
SVRCSCCHTV NLVPGPNQFA HVYCGNCRMM LMYPCGAPSV KCAVCHYITN VNAGDGRAHA  120
PLNSPNGTAT TASGSSSTPK ARSQNQTVVV QNPMSVDESG KLCNFEMRVP RKQPLYLGSG  180
KICVHPTLPR PHLWDFTGIN CHRMKTKTYK MAQQENGQKL DVAKPKDYCN LVVSLLRLLA  240
FGATISATLV MALNNQKQTI VVATIGTTPI QATLNAKFQH TPAFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0364910.0KT036491.1 Solanum tuberosum cultivar Kexin-4 LSD1-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010316974.11e-112PREDICTED: protein LSD1
RefseqXP_010316975.11e-112PREDICTED: protein LSD1
SwissprotQ2QMB32e-60LOL2_ORYSJ; Protein LOL2
TrEMBLA0A0V0I1E01e-110A0A0V0I1E0_SOLCH; Putative ovule protein (Fragment)
TrEMBLM1BWM11e-110M1BWM1_SOLTU; LSD1-like protein
STRINGPGSC0003DMT4000546161e-110(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.16e-55lsd one like 1